Region 1 - Macaque Corpus Callosum G-Ratio Analysis

Slice 01¶

Segmentation overlay¶

Summary¶

Total axons: 496
Excluded: 60 (12.1%)
Retained: 436

Exclusions by category¶

artifact: 3
border: 54
invalid: 1
merge_error: 1
myelin_dominant: 1

Flagged axons (visual review)¶

Exclusion details¶

Axon ID	Category	G-ratio	Axon diam (um)	Myelin thickness (um)	Solidity	Reasons	Closeup
0	border	0.653	0.4800	0.1277	0.968	border-touching	view
1	border	0.839	0.6434	0.0616	0.938	border-touching	view
2	border	0.744	0.3766	0.0647	0.955	border-touching	view
3	border	0.720	0.5678	0.1102	0.964	border-touching	view
4	border	0.747	0.5163	0.0876	0.965	border-touching	view
5	border	0.866	0.7169	0.0554	0.971	border-touching	view
6	border	0.906	1.2229	0.0631	0.964	border-touching	view
18	border	0.833	0.8278	0.0833	0.872	border-touching	view
31	border	0.554	0.2145	0.0862	0.952	border-touching	view
37	border	0.712	0.4158	0.0843	0.957	border-touching	view
51	border	0.817	0.4870	0.0544	0.961	border-touching	view
60	border	0.787	0.5924	0.0803	0.829	border-touching	view
66	invalid	1.000	0.0231	0.0000	1.000	gratio=1.000; no myelin; tiny axon (0.0231 um)	view
79	border	0.657	0.3347	0.0875	0.945	border-touching	view
95	border	0.831	0.9573	0.0972	0.976	border-touching	view
98	border	0.791	0.3544	0.0469	0.963	border-touching	view
110	border	0.680	0.3490	0.0820	0.957	border-touching	view
114	border	0.708	0.4715	0.0971	0.952	border-touching	view
122	border	0.770	0.5142	0.0769	0.962	border-touching	view
131	border	0.188	0.0206	0.0445	1.000	border-touching; tiny axon (0.0206 um); very low gratio (0.188); myelin>>axon (mt/ad=2.16)	view
132	border	0.441	0.1811	0.1148	0.925	border-touching	view
134	border	0.749	0.5564	0.0931	0.940	border-touching	view
146	artifact	0.199	0.0292	0.0589	1.000	tiny axon (0.0292 um); very low gratio (0.199); myelin>>axon (mt/ad=2.02)	view
153	border	0.715	0.5063	0.1007	0.947	border-touching	view
160	border	0.607	0.1969	0.0637	0.931	border-touching	view
170	border	0.755	0.5640	0.0915	0.953	border-touching	view
197	border	0.760	0.7713	0.1220	0.966	border-touching	view
210	myelin_dominant	0.228	0.0505	0.0854	0.923	very low gratio (0.228); myelin>>axon (mt/ad=1.69)	view
219	border	0.874	1.0429	0.0750	0.969	border-touching	view
232	border	0.804	0.6983	0.0849	0.966	border-touching	view
241	merge_error	0.809	0.3282	0.0387	0.683	low solidity (0.683)	view
253	border	0.745	0.6118	0.1045	0.968	border-touching	view
262	border	0.818	0.6690	0.0742	0.967	border-touching	view
273	border	0.868	1.4622	0.1115	0.978	border-touching	view
309	border	0.713	0.4728	0.0951	0.954	border-touching	view
319	border	0.821	0.6290	0.0685	0.938	border-touching	view
321	border	0.832	0.7828	0.0793	0.947	border-touching	view
326	artifact	0.196	0.0292	0.0600	1.000	tiny axon (0.0292 um); very low gratio (0.196); myelin>>axon (mt/ad=2.06)	view
343	border	0.471	0.1763	0.0989	0.915	border-touching	view
350	border	0.844	0.9339	0.0862	0.959	border-touching	view
362	border	0.794	0.9252	0.1204	0.966	border-touching	view
383	border	0.607	0.5059	0.1639	0.959	border-touching	view
389	border	0.770	0.6330	0.0946	0.829	border-touching	view
397	border	0.877	0.9180	0.0646	0.957	border-touching	view
403	border	0.553	0.2279	0.0921	0.916	border-touching	view
420	border	0.694	0.4488	0.0991	0.960	border-touching	view
430	border	0.404	0.1092	0.0806	0.949	border-touching	view
442	border	0.888	1.3800	0.0873	0.934	border-touching	view
448	artifact	0.137	0.0292	0.0923	1.000	tiny axon (0.0292 um); very low gratio (0.137); myelin>>axon (mt/ad=3.16)	view
474	border	0.791	0.7483	0.0987	0.964	border-touching	view
481	border	0.902	1.7799	0.0965	0.915	border-touching	view
483	border	0.799	1.0421	0.1312	0.937	border-touching	view
484	border	0.855	1.0429	0.0883	0.970	border-touching	view
489	border	0.792	0.6427	0.0846	0.969	border-touching	view
490	border	0.584	0.4596	0.1636	0.933	border-touching	view
491	border	0.756	0.5632	0.0911	0.970	border-touching	view
492	border	0.663	0.3453	0.0876	0.953	border-touching	view
493	border	0.714	0.3295	0.0661	0.923	border-touching	view
494	border	0.380	0.3484	0.2838	0.886	border-touching	view
495	border	0.572	0.3622	0.1357	0.948	border-touching	view

Slice 03¶

Segmentation overlay¶

Summary¶

Total axons: 445
Excluded: 72 (16.2%)
Retained: 373

Exclusions by category¶

artifact: 4
border: 61
invalid: 3
merge_error: 3
myelin_dominant: 1

Flagged axons (visual review)¶

Exclusion details¶

Axon ID	Category	G-ratio	Axon diam (um)	Myelin thickness (um)	Solidity	Reasons	Closeup
0	border	0.862	0.9795	0.0783	0.935	border-touching	view
1	border	0.824	0.6632	0.0710	0.951	border-touching	view
2	border	0.926	1.1622	0.0461	0.891	border-touching	view
3	border	0.576	0.1823	0.0671	0.899	border-touching	view
4	border	0.870	1.0768	0.0804	0.951	border-touching	view
5	border	0.910	1.0179	0.0505	0.977	border-touching	view
6	border	0.874	0.3143	0.0227	0.881	border-touching	view
7	border	0.638	0.6384	0.1808	0.780	border-touching	view
8	border	0.863	1.2513	0.0995	0.966	border-touching	view
9	border	0.890	0.9969	0.0615	0.961	border-touching	view
22	border	0.759	0.4582	0.0729	0.967	border-touching	view
30	border	0.866	1.2455	0.0963	0.975	border-touching	view
44	invalid	1.000	0.0146	0.0000	1.000	gratio=1.000; no myelin; tiny axon (0.0146 um)	view
49	border	0.879	0.8430	0.0582	0.959	border-touching	view
54	border	0.912	1.0295	0.0496	0.954	border-touching	view
73	border	0.746	0.4733	0.0806	0.955	border-touching	view
89	artifact	0.093	0.0103	0.0504	1.000	tiny axon (0.0103 um); very low gratio (0.093); myelin>>axon (mt/ad=4.89)	view
97	border	0.880	1.0882	0.0743	0.963	border-touching	view
119	border	0.785	0.6027	0.0825	0.964	border-touching	view
122	border	0.811	0.6470	0.0752	0.966	border-touching	view
135	border	0.787	0.6115	0.0825	0.955	border-touching	view
145	border	0.682	0.4353	0.1015	0.944	border-touching	view
161	border	0.237	0.0505	0.0816	0.857	border-touching; very low gratio (0.237); myelin>>axon (mt/ad=1.61)	view
165	border	0.849	0.6394	0.0567	0.962	border-touching	view
171	border	0.293	0.0292	0.0352	1.000	border-touching; tiny axon (0.0292 um); very low gratio (0.293); myelin>>axon (mt/ad=1.20)	view
175	border	0.841	0.7861	0.0745	0.945	border-touching	view
184	border	0.859	0.8706	0.0714	0.975	border-touching	view
196	merge_error	0.807	0.4760	0.0568	0.663	low solidity (0.663)	view
203	border	0.823	0.5055	0.0544	0.964	border-touching	view
223	border	0.676	0.3668	0.0878	0.865	border-touching	view
224	artifact	0.183	0.0206	0.0460	1.000	tiny axon (0.0206 um); very low gratio (0.183); myelin>>axon (mt/ad=2.23)	view
234	border	0.843	0.5984	0.0558	0.963	border-touching	view
247	artifact	0.318	0.0292	0.0313	1.000	tiny axon (0.0292 um); myelin>>axon (mt/ad=1.07)	view
248	border	0.798	0.4991	0.0630	0.939	border-touching	view
250	border	0.287	0.0413	0.0512	0.889	border-touching; tiny axon (0.0413 um); very low gratio (0.287); myelin>>axon (mt/ad=1.24)	view
254	border	0.771	0.5510	0.0817	0.955	border-touching	view
269	border	0.743	0.2926	0.0507	0.944	border-touching	view
278	border	0.667	0.9386	0.2342	0.895	border-touching	view
289	invalid	1.000	0.0146	0.0000	1.000	gratio=1.000; no myelin; tiny axon (0.0146 um)	view
291	border	0.904	1.8257	0.0967	0.955	border-touching	view
292	invalid	1.000	0.0103	0.0000	1.000	gratio=1.000; no myelin; tiny axon (0.0103 um)	view
304	border	0.721	0.6636	0.1286	0.945	border-touching	view
317	merge_error	0.778	1.6980	0.2424	0.724	low solidity (0.724)	view
321	artifact	0.097	0.0206	0.0960	1.000	tiny axon (0.0206 um); very low gratio (0.097); myelin>>axon (mt/ad=4.65)	view
330	border	0.546	0.2104	0.0875	0.943	border-touching	view
339	border	0.558	0.2094	0.0828	0.945	border-touching	view
353	border	0.601	0.3250	0.1080	0.915	border-touching	view
378	border	0.664	0.2761	0.0699	0.952	border-touching	view
390	border	0.672	0.4244	0.1034	0.956	border-touching	view
400	merge_error	0.680	0.7016	0.1654	0.692	low solidity (0.692)	view
401	border	0.699	0.3737	0.0805	0.916	border-touching	view
403	border	0.544	0.2769	0.1160	0.942	border-touching	view
411	border	0.712	1.0044	0.2027	0.958	border-touching	view
413	border	0.796	1.0615	0.1357	0.955	border-touching	view
426	border	0.842	1.0404	0.0977	0.972	border-touching	view
428	border	0.796	0.7939	0.1019	0.906	border-touching	view
429	border	0.664	0.4861	0.1232	0.951	border-touching	view
430	border	0.768	0.7771	0.1172	0.960	border-touching	view
431	border	0.667	0.5393	0.1348	0.933	border-touching	view
432	border	0.712	0.5385	0.1091	0.942	border-touching	view
433	border	0.704	0.5869	0.1232	0.966	border-touching	view
434	border	0.710	0.5487	0.1120	0.952	border-touching	view
435	border	0.727	0.7574	0.1419	0.868	border-touching	view
436	border	0.622	0.4530	0.1374	0.941	border-touching	view
437	border	0.680	0.4760	0.1122	0.959	border-touching	view
438	border	0.724	0.4773	0.0910	0.967	border-touching	view
439	border	0.621	0.2398	0.0733	0.941	border-touching	view
440	border	0.507	0.1869	0.0910	0.932	border-touching	view
441	myelin_dominant	0.293	0.0715	0.0861	0.842	very low gratio (0.293); myelin>>axon (mt/ad=1.20)	view
442	border	0.440	0.1530	0.0975	0.526	border-touching; low solidity (0.526)	view
443	border	0.560	0.2389	0.0940	0.952	border-touching	view
444	border	0.596	0.1811	0.0615	0.933	border-touching	view

Slice 07¶

Segmentation overlay¶

Summary¶

Total axons: 496
Excluded: 94 (19.0%)
Retained: 402

Exclusions by category¶

artifact: 6
border: 80
invalid: 1
merge_error: 6
myelin_dominant: 1

Flagged axons (visual review)¶

Exclusion details¶

Axon ID	Category	G-ratio	Axon diam (um)	Myelin thickness (um)	Solidity	Reasons	Closeup
0	border	0.767	0.8463	0.1289	0.947	border-touching	view
1	border	0.809	0.4719	0.0556	0.954	border-touching	view
2	border	0.666	0.2659	0.0667	0.953	border-touching	view
3	border	0.536	0.0923	0.0399	0.769	border-touching	view
4	border	0.849	0.9343	0.0834	0.975	border-touching	view
5	border	0.788	0.6354	0.0855	0.949	border-touching	view
6	border	0.855	0.9519	0.0806	0.908	border-touching	view
7	border	0.853	0.8275	0.0715	0.967	border-touching	view
8	border	0.837	0.6062	0.0591	0.966	border-touching	view
9	border	0.889	0.4132	0.0258	0.931	border-touching	view
10	border	0.214	0.0292	0.0535	1.000	border-touching; tiny axon (0.0292 um); very low gratio (0.214); myelin>>axon (mt/ad=1.83)	view
11	border	0.906	1.3801	0.0712	0.899	border-touching	view
12	border	0.799	0.6266	0.0787	0.950	border-touching	view
13	border	0.831	1.0367	0.1054	0.943	border-touching	view
14	border	0.852	0.7509	0.0653	0.929	border-touching	view
15	border	0.683	0.2829	0.0657	0.932	border-touching	view
35	border	0.844	0.7175	0.0662	0.948	border-touching	view
41	border	0.799	0.4402	0.0554	0.957	border-touching	view
45	border	0.749	0.4710	0.0790	0.837	border-touching	view
58	border	0.355	0.1130	0.1027	0.968	border-touching	view
62	border	0.471	0.1880	0.1055	0.912	border-touching	view
73	border	0.793	0.4209	0.0550	0.962	border-touching	view
77	artifact	0.510	0.0461	0.0222	0.800	tiny axon (0.0461 um)	view
97	border	0.806	0.6280	0.0754	0.968	border-touching	view
98	border	0.716	0.2577	0.0510	0.950	border-touching	view
109	border	0.634	0.2776	0.0802	0.897	border-touching	view
117	border	0.758	0.6009	0.0959	0.952	border-touching	view
132	border	0.680	0.3441	0.0808	0.958	border-touching	view
134	border	0.846	0.7955	0.0727	0.961	border-touching	view
145	border	0.711	0.3985	0.0811	0.903	border-touching	view
146	artifact	0.264	0.0357	0.0498	0.923	tiny axon (0.0357 um); very low gratio (0.264); myelin>>axon (mt/ad=1.39)	view
155	artifact	0.191	0.0206	0.0438	1.000	tiny axon (0.0206 um); very low gratio (0.191); myelin>>axon (mt/ad=2.12)	view
166	border	0.482	0.1415	0.0759	0.732	border-touching; low solidity (0.732)	view
168	artifact	0.478	0.0292	0.0159	1.000	tiny axon (0.0292 um)	view
173	border	0.469	0.1823	0.1031	0.937	border-touching	view
178	border	0.783	0.7920	0.1099	0.960	border-touching	view
179	border	0.809	0.7839	0.0928	0.968	border-touching	view
190	merge_error	0.696	0.9515	0.2082	0.613	low solidity (0.613)	view
191	border	0.769	0.1111	0.0167	0.773	border-touching	view
201	border	0.843	1.2578	0.1171	0.942	border-touching	view
204	border	0.669	0.3109	0.0769	0.950	border-touching	view
210	border	0.831	0.6687	0.0679	0.943	border-touching	view
212	border	0.335	0.0946	0.0937	0.923	border-touching	view
218	border	0.544	0.1947	0.0816	0.918	border-touching	view
225	border	0.618	0.3243	0.1002	0.958	border-touching	view
231	artifact	nan	0.0425	nan	0.630	tiny axon (0.0425 um); low solidity (0.630)	view
235	border	0.627	0.2032	0.0604	0.904	border-touching	view
237	border	0.135	0.0206	0.0662	1.000	border-touching; tiny axon (0.0206 um); very low gratio (0.135); myelin>>axon (mt/ad=3.21)	view
244	invalid	1.000	0.0206	0.0000	1.000	gratio=1.000; no myelin; tiny axon (0.0206 um)	view
271	border	0.559	0.1272	0.0502	0.944	border-touching	view
272	border	0.381	0.0292	0.0237	1.000	border-touching; tiny axon (0.0292 um)	view
278	border	0.639	0.4596	0.1296	0.899	border-touching	view
286	merge_error	0.642	0.3353	0.0934	0.693	low solidity (0.693)	view
290	border	0.544	0.3210	0.1347	0.954	border-touching	view
293	border	0.814	0.6513	0.0745	0.945	border-touching	view
303	border	0.424	0.1846	0.1251	0.950	border-touching	view
306	border	0.793	1.1367	0.1487	0.836	border-touching	view
309	merge_error	0.819	0.6709	0.0743	0.747	low solidity (0.747)	view
318	merge_error	0.743	0.8262	0.1428	0.738	low solidity (0.738)	view
321	border	0.707	0.5208	0.1081	0.879	border-touching	view
331	merge_error	0.667	0.6680	0.1667	0.739	low solidity (0.739)	view
345	border	0.556	0.2174	0.0869	0.892	border-touching	view
346	border	0.761	0.6952	0.1089	0.900	border-touching	view
352	myelin_dominant	0.226	0.0546	0.0934	0.824	very low gratio (0.226); myelin>>axon (mt/ad=1.71)	view
363	border	0.716	0.6417	0.1271	0.948	border-touching	view
370	artifact	0.160	0.0292	0.0767	1.000	tiny axon (0.0292 um); very low gratio (0.160); myelin>>axon (mt/ad=2.63)	view
372	merge_error	0.367	0.0584	0.0504	0.711	low solidity (0.711)	view
378	border	0.422	0.1459	0.1001	0.858	border-touching	view
384	border	0.734	0.5745	0.1043	0.945	border-touching	view
402	border	0.827	1.1465	0.1201	0.892	border-touching	view
419	border	0.614	0.3061	0.0960	0.920	border-touching	view
443	border	0.720	0.8319	0.1615	0.954	border-touching	view
452	border	0.725	0.4909	0.0933	0.902	border-touching	view
465	border	0.809	1.1216	0.1320	0.926	border-touching	view
466	border	0.769	0.8285	0.1244	0.961	border-touching	view
472	border	0.490	0.2969	0.1544	0.955	border-touching	view
474	border	0.851	1.2574	0.1103	0.918	border-touching	view
476	border	0.842	0.9052	0.0847	0.928	border-touching	view
480	border	0.740	0.8024	0.1411	0.937	border-touching	view
481	border	0.787	0.9350	0.1263	0.942	border-touching	view
482	border	0.694	0.6208	0.1369	0.950	border-touching	view
483	border	0.691	0.4624	0.1034	0.963	border-touching	view
484	border	0.748	0.5088	0.0856	0.943	border-touching	view
485	border	0.686	0.4817	0.1101	0.846	border-touching	view
486	border	0.710	0.4309	0.0880	0.966	border-touching	view
487	border	0.682	0.3645	0.0851	0.963	border-touching	view
488	border	0.637	0.3295	0.0940	0.916	border-touching	view
489	border	0.547	0.1799	0.0745	0.806	border-touching	view
490	border	0.484	0.2001	0.1067	0.933	border-touching	view
491	border	0.441	0.2510	0.1589	0.946	border-touching	view
492	border	0.429	0.1430	0.0950	0.881	border-touching	view
493	border	0.238	0.0851	0.1365	0.932	border-touching; very low gratio (0.238); myelin>>axon (mt/ad=1.60)	view
494	border	0.298	0.0899	0.1059	0.817	border-touching; very low gratio (0.298); myelin>>axon (mt/ad=1.18)	view
495	border	0.423	0.0505	0.0344	0.800	border-touching	view